Welcome to the jungle: sequencing for conservation

Talking Techniques

English - January 25, 2023 14:43 - 43 minutes - 28.7 MB
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Previous Episode: Neuropixels: big data heaven or burying the lead in averages?

Next Episode: Open neuroscience and the meaning of FAIR

In this episode of Talking Techniques, we head to the Ecuadorian rainforest to chat about the use of sequencing in conservation with Zane Libke, a field researcher based at Sumak Kawsay In Situ (Pastaza, Ecuador). Zane discusses how he turned his fascination with nature into a career, his current work using nanopore sequencing technologies to find undescribed species and helping train future field researchers.

We also explore the benefits of fighting biodiversity in a more local-centric way and using research to protect the area from exploitative companies.

Contents:Intro: 00:00–01:35Zane’s work at Sumak Kawsay In Situ: 01:35–05:05Turning a fascination with nature into a career: 05:05–08:20The importance of sequencing for conservation: 08:20–12:25Technologies being used to sequence in the field: 12:25–14:15Portable nanopore sequencing with the MinION: 13:15–15:35Exporting samples means exporting opportunity: 15:35–18:40The sequencing workflow: 17:40–24:50Data processing: 24:50–27:45Using these technologies to find undescribed species: 27:45–32:20Fighting biodiversity loss in a more local-centric way: 32:20–34:55Using research to protect the area from exploitation: 34:55–38:50

What the future holds: 38:50–43:22

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